Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AHCY_chr20_34275268_34308355	0/0	t0004	852	1	0	1	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0005	852	1	0	0	0	0	1	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0006	852	1	0	0	1	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0007	852	1	1	0	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0008	852	1	0	0	1	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHCY_chr20_34275268_34308355	0/0	t0009	852	1	1	0	0	0	0	copy fasta	AHCY	chr20	34275268	34308355
AHDC1_chr1_27529245_27609144	1/1	t0001	1617	121	50	22	26	6	15	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0002	1616	11	8	3	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0003	1616	11	9	1	0	0	1	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0004	1606	10	1	2	2	0	5	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0005	1617	6	6	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0006	1617	5	5	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0007	1617	4	4	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0008	1616	3	0	2	0	1	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0009	1617	2	1	0	0	1	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0010	1617	2	0	2	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0011	1617	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0012	1617	1	0	0	0	0	1	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0013	1617	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0014	1617	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHDC1_chr1_27529245_27609144	0/0	t0015	1617	1	1	0	0	0	0	copy fasta	AHDC1	chr1	27529245	27609144
AHI1_chr6_135278532_135502740	1/1	t0001	2473	104	7	37	34	9	15	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0002	2475	34	12	7	11	1	3	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0003	2469	28	25	3	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0004	2473	19	11	2	6	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0005	2473	15	15	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0006	2473	4	0	4	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0007	2470	2	1	1	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0008	2475	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0009	2473	2	0	0	2	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0010	2469	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0011	2469	2	2	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0012	2469	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0013	2470	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0014	2475	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0015	2475	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0016	2473	1	0	0	1	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHI1_chr6_135278532_135502740	0/0	t0017	2469	1	1	0	0	0	0	copy fasta	AHI1	chr6	135278532	135502740
AHNAK2_chr14_104932253_104983374	1/0	t0001	948	161	32	32	82	6	8	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/1	t0002	948	131	20	40	42	6	22	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0003	947	27	27	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0004	948	11	0	0	9	0	2	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0005	948	8	0	0	8	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0006	948	4	0	1	0	0	3	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0007	948	4	1	0	0	0	3	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0008	948	2	0	0	2	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0009	948	2	2	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0010	948	1	0	0	1	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0011	948	1	0	1	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374
AHNAK2_chr14_104932253_104983374	0/0	t0012	947	1	1	0	0	0	0	copy fasta	AHNAK2	chr14	104932253	104983374