Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCC9_chr12_21792389_21946426	0/0	t0018	4019	1	0	0	0	0	1	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0019	4019	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0020	4019	1	0	1	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0021	4019	1	0	0	0	0	1	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0022	4019	1	0	0	0	1	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0023	4019	1	1	0	0	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCC9_chr12_21792389_21946426	0/0	t0024	4019	1	0	0	1	0	0	copy fasta	ABCC9	chr12	21792389	21946426
ABCD1_chrX_153719856_153749755	0/1	t0001	1432	114	15	25	58	4	11	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	1/0	t0002	1432	80	10	18	37	5	9	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0003	1432	38	31	0	7	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0004	1432	18	1	2	6	2	7	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0005	1432	12	9	2	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0006	1432	4	4	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0007	1432	4	4	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0008	1432	3	0	0	3	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0009	1432	2	0	0	0	0	2	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0010	1433	2	0	0	2	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0011	1431	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0012	1432	1	1	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0013	1433	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0014	1432	1	0	1	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0015	1432	1	1	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0016	1432	1	1	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0017	1431	1	0	0	0	0	1	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	t0018	1432	1	1	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	1/1	t0001	4068	160	32	27	80	2	17	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0002	4068	56	0	8	35	1	12	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0003	4068	24	0	3	20	0	1	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0004	4068	18	5	6	6	0	1	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0005	4068	17	17	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0006	4068	15	3	4	3	1	4	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0007	4068	7	7	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0008	4068	6	0	6	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0009	4068	5	3	0	1	0	1	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0010	4068	4	4	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0011	4068	4	2	2	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0012	4063	3	0	0	3	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0013	4068	2	0	0	0	2	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0014	4068	2	2	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0015	4068	2	2	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0016	4068	1	0	0	1	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0017	4068	1	0	0	1	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0018	4068	1	0	1	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0019	4063	1	0	0	1	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0020	4068	1	0	0	1	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0021	4068	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0022	4068	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0023	4068	1	0	1	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0024	4068	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	t0025	4068	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803