Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AK1_chr9_127861486_127882675	0/1	t0001	1608	270	24	49	155	13	28	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0002	1607	34	17	6	0	1	10	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0003	1611	33	23	7	0	3	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0004	1609	15	0	0	15	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	1/0	t0005	1608	9	1	1	1	1	4	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0006	1608	7	0	7	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0007	1607	6	2	1	3	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0008	1608	5	1	1	2	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0009	1608	5	5	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0010	1609	4	1	0	3	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0011	1608	4	3	1	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0012	1608	3	0	1	0	0	2	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0013	1608	3	3	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0014	1609	3	3	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0015	1608	3	3	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0016	1608	3	3	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0017	1607	2	2	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0018	1608	2	0	0	0	0	2	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0019	1608	2	0	0	1	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0020	1608	2	2	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0021	1607	2	1	1	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0022	1609	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0023	1608	1	0	0	1	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0024	1608	1	0	0	0	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0025	1608	1	0	0	1	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0026	1611	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0027	1608	1	0	0	0	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0028	1609	1	0	1	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0029	1608	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	t0030	1607	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK2_chr1_33002986_33041883	1/1	t0001	5251	183	45	33	75	10	18	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0002	5251	60	0	15	34	4	7	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0003	5251	18	0	0	17	0	1	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0004	5251	17	16	1	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0005	5251	13	0	0	13	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0006	5251	11	7	4	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0007	5251	10	10	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0008	5251	4	0	0	4	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0009	5251	3	3	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0010	5251	3	3	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0011	5251	3	0	1	0	2	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0012	5251	2	0	0	2	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0013	5251	2	2	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0014	5251	2	2	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0015	5251	2	2	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0016	5251	1	0	1	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0017	5251	1	0	1	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0018	5238	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0019	5251	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	t0020	5251	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883