Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKIRIN2_chr6_87669860_87707233	0/0	t0040	1286	1	1	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0041	1287	1	0	1	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	t0042	1287	1	0	0	0	0	1	copy fasta	AKIRIN2	chr6	87669860	87707233
AKNAD1_chr1_108810901_108862094	1/0	t0001	540	227	36	50	122	6	12	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/1	t0002	541	87	14	16	40	4	12	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0003	540	36	25	4	4	2	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0004	541	25	10	4	3	3	5	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0005	540	8	4	1	0	1	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0006	540	7	6	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0007	541	2	0	2	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0008	541	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0009	540	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0010	541	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0011	541	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0012	540	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	t0013	541	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNA_chr9_114329156_114392982	0/0	t0001	3134	117	14	19	70	1	13	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/1	t0002	3133	45	6	8	22	2	6	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0003	3135	41	5	4	25	3	4	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0004	3135	28	0	10	9	5	4	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0005	3135	12	0	7	1	2	2	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0006	3133	11	11	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0007	3135	8	0	7	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0008	3130	8	7	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0009	3134	6	5	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0010	3130	6	0	1	4	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0011	3135	5	0	0	4	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	1/0	t0012	3135	5	0	1	0	2	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0013	3132	5	5	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0014	3130	4	4	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0015	3130	4	0	0	4	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0016	3129	4	4	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0017	3133	4	0	0	4	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0018	3130	4	4	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0019	3135	4	0	4	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0020	3130	4	3	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0021	3135	3	0	2	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0022	3135	3	0	2	0	1	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0023	3130	3	3	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0024	3130	3	2	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0025	3133	2	1	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0026	3134	2	0	0	2	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0027	3135	2	0	0	2	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0028	3134	2	0	0	2	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0029	3134	2	2	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0030	3130	2	2	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0031	3135	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0032	3130	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0033	3134	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	t0034	3135	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982