Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AKT1_chr14_104764349_104800748	0/0	t0003	1516	19	18	1	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0004	1516	12	9	2	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0005	1516	5	0	0	4	0	1	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0006	1516	4	1	2	0	1	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0007	1516	4	4	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0008	1530	3	0	0	3	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0009	1516	2	2	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	1/0	t0010	1515	1	0	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0011	1516	1	0	0	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0012	1516	1	0	0	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0013	1516	1	1	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0014	1516	1	1	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0015	1516	1	0	0	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0016	1516	1	0	0	0	1	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0017	1516	1	0	0	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0018	1516	1	1	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0019	1516	1	0	0	0	0	1	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0020	1516	1	0	0	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0021	1516	1	0	0	0	0	1	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	t0022	1516	1	1	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT2_chr19_40225317_40290345	1/1	t0001	3805	158	36	24	80	8	8	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0002	3805	86	7	14	49	3	13	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0003	3804	42	24	5	11	1	1	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0004	3806	8	1	7	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0005	3805	6	6	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0006	3805	6	0	0	6	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0007	3805	4	2	2	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0008	3805	3	0	0	3	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0009	3805	3	0	0	0	2	1	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0010	3806	3	3	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0011	3805	3	3	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0012	3805	3	0	3	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0013	3805	2	0	1	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0014	3805	2	1	1	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0015	3805	2	0	0	2	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0016	3805	2	2	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0017	3806	2	0	1	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0018	3805	2	2	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0019	3805	1	0	1	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0020	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0021	3805	1	0	0	0	1	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0022	3806	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0023	3804	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0024	3805	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0025	3805	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0026	3805	1	0	0	0	1	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0027	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0028	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0029	3806	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	t0030	3805	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345