Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALAS1_chr3_52193160_52219327	0/0	t0005	453	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS2_chrX_55004055_55035977	1/1	t0001	177	265	58	54	121	5	25	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	t0002	177	18	18	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	t0003	178	1	0	0	0	0	1	copy fasta	ALAS2	chrX	55004055	55035977
ALB_chr4_73399287_73426482	1/1	t0001	456	388	89	72	172	16	37	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	t0002	456	1	0	0	1	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	t0003	456	1	0	0	0	0	1	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	t0004	456	1	0	0	1	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	t0005	456	1	1	0	0	0	0	copy fasta	ALB	chr4	73399287	73426482
ALCAM_chr3_105361909_105581900	1/1	t0001	2950	191	34	26	93	9	27	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0002	2950	61	2	17	30	4	8	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0003	2950	39	14	13	8	2	2	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0004	2950	37	11	2	22	2	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0005	2950	14	10	1	3	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0006	2950	5	5	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0007	2950	4	1	1	2	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0008	2950	4	0	0	2	0	2	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0009	2950	3	3	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0010	2950	2	1	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0011	2950	1	0	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0012	2950	1	0	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0013	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0014	2950	1	0	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0015	2950	1	0	0	1	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0016	2950	1	0	0	0	0	1	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0017	2950	1	0	0	1	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0018	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0019	2950	1	0	0	0	1	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0020	2950	1	0	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0021	2950	1	0	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0022	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0023	2950	1	0	0	1	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0024	2950	1	0	0	1	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0025	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0026	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0027	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	t0028	2950	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALDH16A1_chr19_49448225_49476050	1/0	t0001	691	163	19	47	62	7	27	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0002	693	89	25	15	34	4	11	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/1	t0003	693	32	26	2	0	1	2	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0004	689	26	7	10	9	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0005	692	9	4	0	5	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0006	691	6	2	0	0	0	4	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0007	694	6	4	1	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0008	694	4	4	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0009	693	3	2	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0010	692	2	0	1	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0011	691	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	t0012	691	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH18A1_chr10_95600941_95661711	1/0	t0001	965	258	69	29	127	6	26	copy fasta	ALDH18A1	chr10	95600941	95661711