Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG12_chr22_49895229_49923438	0/0	t0058	3864	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0059	3864	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0060	3862	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0061	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0062	3864	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0063	3808	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0064	3719	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0065	3717	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0066	3810	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0067	3810	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0068	3808	1	0	1	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0069	3808	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0070	3809	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0071	3804	1	0	0	1	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0072	3809	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0073	3864	1	0	0	0	0	1	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	t0074	3808	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG13_chrX_111676170_111765649	1/1	t0001	700	190	74	23	70	5	16	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	t0002	700	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG14_chr1_94969405_95077951	0/0	t0001	8727	38	7	8	14	4	5	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0002	8730	18	0	0	17	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0003	8731	15	0	0	15	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0004	8726	13	0	4	7	0	2	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0005	8730	12	2	2	7	1	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0006	8731	8	1	3	0	2	2	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0007	8729	7	0	6	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0008	8724	6	6	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0009	8728	6	1	2	2	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0010	8732	5	0	0	5	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0011	8726	5	0	0	5	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0012	8725	5	1	2	0	1	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0013	8729	5	0	0	5	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0014	8729	5	2	1	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0015	8730	5	0	3	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0016	8732	4	3	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0017	8728	4	0	0	4	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0018	8732	4	0	4	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0019	8731	4	0	1	2	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0020	8729	4	4	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0021	8728	4	1	1	1	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0022	8731	4	0	4	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0023	8729	3	3	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0024	8728	3	3	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0025	8730	3	0	0	0	0	3	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0026	8730	3	0	0	1	0	2	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0027	8730	3	0	0	3	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0028	8727	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0029	8730	2	1	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0030	8731	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	1/0	t0031	8725	2	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951