Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG14_chr1_94969405_95077951	0/0	t0182	8733	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0183	8727	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0184	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0185	8729	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0186	8732	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0187	8730	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0188	8728	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0189	8728	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0190	8729	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0191	8726	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0192	8732	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0193	8733	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0194	8734	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0195	8733	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0196	8736	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0197	8737	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0198	8729	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG1L2_chr3_130076831_130103390	1/0	t0001	322	210	54	26	107	8	14	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	t0002	322	45	6	2	33	0	4	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	t0003	322	3	3	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	t0004	322	2	0	0	2	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1L2_chr3_130076831_130103390	0/0	t0005	334	1	1	0	0	0	0	copy fasta	ALG1L2	chr3	130076831	130103390
ALG1_chr16_5066843_5092379	0/0	t0001	2502	124	12	18	70	3	21	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/1	t0002	2507	68	6	24	26	3	8	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0003	2502	66	15	12	30	2	7	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0004	2505	48	7	16	22	1	2	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0005	2507	41	9	6	23	1	2	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0006	2506	11	11	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0007	2503	10	3	2	5	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0008	2508	9	1	2	5	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0009	2506	6	0	1	4	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0010	2506	6	5	1	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0011	2505	5	5	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	1/0	t0012	2506	5	4	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0013	2502	5	5	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0014	2502	5	5	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0015	2502	3	3	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0016	2502	3	0	0	3	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0017	2508	3	1	0	2	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0018	2502	2	0	1	0	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0019	2505	2	0	2	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0020	2502	2	2	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0021	2507	2	0	0	2	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0022	2507	2	0	0	0	2	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0023	2503	1	0	1	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0024	2502	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0025	2506	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0026	2505	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0027	2506	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0028	2506	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379