Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG1_chr16_5066843_5092379	0/0	t0029	2506	1	0	0	0	0	1	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0030	2503	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0031	2502	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0032	2505	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0033	2502	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0034	2502	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0035	2502	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0036	2507	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0037	2508	1	0	0	1	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG1_chr16_5066843_5092379	0/0	t0038	2507	1	1	0	0	0	0	copy fasta	ALG1	chr16	5066843	5092379
ALG2_chr9_99211425_99226942	1/1	t0001	1558	366	81	74	151	18	40	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0002	1558	3	3	0	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0003	1558	2	0	0	0	0	2	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0004	1558	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0005	1558	1	0	1	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0006	1558	1	0	0	1	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0007	1558	1	1	0	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG2_chr9_99211425_99226942	0/0	t0008	1558	1	1	0	0	0	0	copy fasta	ALG2	chr9	99211425	99226942
ALG3_chr3_184237301_184253962	1/0	t0001	236	227	53	46	98	11	18	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/1	t0002	236	112	39	17	38	5	12	copy fasta	ALG3	chr3	184237301	184253962
ALG3_chr3_184237301_184253962	0/0	t0003	236	1	0	1	0	0	0	copy fasta	ALG3	chr3	184237301	184253962
ALG5_chr13_36944738_37004340	1/1	t0001	245	275	89	66	80	12	26	copy fasta	ALG5	chr13	36944738	37004340
ALG5_chr13_36944738_37004340	0/0	t0002	245	1	1	0	0	0	0	copy fasta	ALG5	chr13	36944738	37004340
ALG6_chr1_63362627_63443553	1/1	t0001	1802	125	9	21	76	5	12	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0002	1802	120	17	23	58	4	18	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0003	1798	79	13	16	40	1	9	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0004	1798	20	17	2	0	0	1	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0005	1802	7	0	0	3	0	4	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0006	1802	6	6	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0007	1798	6	5	1	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0008	1798	5	5	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0009	1802	4	3	1	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0010	1802	3	3	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0011	1802	3	3	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0012	1802	2	2	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0013	1798	1	0	0	1	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0014	1802	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0015	1802	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0016	1802	1	0	0	1	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0017	1802	1	0	0	1	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0018	1802	1	0	0	1	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0019	1802	1	0	0	1	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG6_chr1_63362627_63443553	0/0	t0020	1803	1	1	0	0	0	0	copy fasta	ALG6	chr1	63362627	63443553
ALG8_chr11_78095946_78144626	1/1	t0001	57	401	86	74	185	12	42	copy fasta	ALG8	chr11	78095946	78144626
ALG8_chr11_78095946_78144626	0/0	t0002	57	1	0	0	1	0	0	copy fasta	ALG8	chr11	78095946	78144626
ALG9_chr11_111777195_111876581	0/0	t0001	4302	89	11	16	46	2	14	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	1/1	t0002	4302	74	8	17	31	3	13	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0003	4289	64	12	17	25	5	5	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0004	4301	20	14	1	5	0	0	copy fasta	ALG9	chr11	111777195	111876581
ALG9_chr11_111777195_111876581	0/0	t0005	4303	16	12	4	0	0	0	copy fasta	ALG9	chr11	111777195	111876581