Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALS2CL_chr3_46663995_46698679	0/0	t0029	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0030	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0031	2052	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0032	2052	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0033	2052	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0034	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0035	2052	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0036	2052	1	0	0	0	1	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0037	2052	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0038	2052	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	t0039	2052	1	0	0	0	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2_chr2_201695267_201785933	1/1	t0001	1702	272	59	50	116	14	31	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0002	1702	55	2	2	45	1	5	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0003	1702	12	10	2	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0004	1702	4	0	3	0	0	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0005	1702	2	2	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0006	1702	2	2	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0007	1702	2	2	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0008	1702	1	0	0	0	0	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0009	1702	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0010	1702	1	0	1	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0011	1702	1	0	0	0	1	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	t0012	1702	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALX1_chr12_85275220_85306784	1/1	t0001	352	380	86	68	175	13	36	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	t0002	352	2	2	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	t0003	352	1	0	0	1	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	t0004	352	1	0	0	0	1	0	copy fasta	ALX1	chr12	85275220	85306784
ALX3_chr1_110054870_110075672	0/0	t0001	952	267	46	36	154	6	25	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	1/1	t0002	924	116	19	31	40	12	12	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0003	953	11	11	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0004	952	5	3	0	0	0	2	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0005	952	5	4	1	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0006	952	5	5	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0007	952	4	4	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0008	952	3	0	3	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0009	952	2	2	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0010	952	1	1	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0011	952	1	0	0	0	0	1	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0012	952	1	1	0	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	t0013	924	1	0	1	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX4_chr11_44255440_44315139	0/0	t0001	4492	100	2	17	63	3	15	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0002	4492	38	10	6	19	0	3	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0003	4492	34	9	9	7	7	2	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0004	4492	30	6	8	15	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0005	4492	28	0	0	26	0	2	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/1	t0006	4492	22	0	3	12	2	4	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0007	4492	12	8	1	0	3	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0008	4492	11	0	1	10	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0009	4492	9	8	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	t0010	4492	8	0	6	2	0	0	copy fasta	ALX4	chr11	44255440	44315139