Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AMFR_chr16_56356452_56430545	0/0	t0030	1681	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0031	1667	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0032	1668	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0033	1670	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0034	1670	1	0	0	0	0	1	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0035	1677	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0036	1675	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0037	1676	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0038	1672	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0039	1678	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0040	1683	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0041	1689	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0042	1680	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0043	1680	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0044	1675	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0045	1689	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0046	1688	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0047	1689	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0048	1685	1	0	1	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0049	1698	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0050	1708	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0051	1688	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0052	1679	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0053	1683	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0054	1689	1	1	0	0	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0055	1712	1	0	0	0	0	1	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0056	1691	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMFR_chr16_56356452_56430545	0/0	t0057	1694	1	0	0	1	0	0	copy fasta	AMFR	chr16	56356452	56430545
AMHR2_chr12_53418855_53436672	1/1	t0001	280	264	74	41	106	8	33	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	t0002	280	90	14	13	55	2	6	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	t0003	280	1	0	0	0	0	1	copy fasta	AMHR2	chr12	53418855	53436672
AMHR2_chr12_53418855_53436672	0/0	t0004	280	1	0	0	1	0	0	copy fasta	AMHR2	chr12	53418855	53436672
AMH_chr19_2244323_2257073	1/1	t0001	127	425	89	80	190	18	46	copy fasta	AMH	chr19	2244323	2257073
AMH_chr19_2244323_2257073	0/0	t0002	127	7	7	0	0	0	0	copy fasta	AMH	chr19	2244323	2257073
AMIGO1_chr1_109499178_109514727	1/0	t0001	3649	132	14	28	76	4	9	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0002	3649	89	10	3	65	1	10	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0003	3649	47	31	2	10	2	2	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/1	t0004	3649	39	11	7	3	2	15	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0005	3649	37	21	10	0	3	3	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0006	3649	10	0	1	8	0	1	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0007	3649	5	5	0	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0008	3649	4	0	2	0	2	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0009	3649	4	2	1	0	0	1	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0010	3649	4	0	0	4	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0011	3649	4	0	0	4	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0012	3649	3	0	0	3	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0013	3649	2	0	2	0	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0014	3649	2	0	0	2	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0015	3649	2	0	1	1	0	0	copy fasta	AMIGO1	chr1	109499178	109514727
AMIGO1_chr1_109499178_109514727	0/0	t0016	3649	1	0	0	0	0	1	copy fasta	AMIGO1	chr1	109499178	109514727