Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANAPC10_chr4_144989576_145103196	0/0	t0008	887	1	0	0	1	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0009	887	1	0	0	1	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0010	887	1	0	0	1	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC10_chr4_144989576_145103196	0/0	t0011	886	1	0	1	0	0	0	copy fasta	ANAPC10	chr4	144989576	145103196
ANAPC11_chr17_81886723_81905255	1/1	t0001	384	311	84	66	104	9	46	copy fasta	ANAPC11	chr17	81886723	81905255
ANAPC11_chr17_81886723_81905255	0/0	t0002	384	1	0	0	0	1	0	copy fasta	ANAPC11	chr17	81886723	81905255
ANAPC13_chr3_134472706_134490985	1/1	t0001	946	362	72	67	164	13	44	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0002	946	13	11	2	0	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0003	945	5	0	3	0	0	2	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0004	946	5	5	0	0	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0005	946	4	4	0	0	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0006	946	2	0	1	0	1	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0007	946	1	0	0	1	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0008	933	1	0	0	1	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC13_chr3_134472706_134490985	0/0	t0009	946	1	0	1	0	0	0	copy fasta	ANAPC13	chr3	134472706	134490985
ANAPC15_chr11_72104587_72117695	1/1	t0001	436	399	88	72	181	10	46	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	t0002	436	6	6	0	0	0	0	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	t0003	436	2	0	0	2	0	0	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC15_chr11_72104587_72117695	0/0	t0004	436	1	0	0	1	0	0	copy fasta	ANAPC15	chr11	72104587	72117695
ANAPC16_chr10_72211012_72240860	1/0	t0001	2899	113	6	24	68	3	11	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/1	t0002	2899	102	31	23	28	3	16	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0003	2900	43	18	0	24	0	1	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0004	2898	24	21	2	0	1	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0005	2898	20	4	1	11	0	4	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0006	2901	7	6	1	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0007	2899	6	0	0	6	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0008	2899	5	0	5	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0009	2900	4	0	0	3	0	1	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0010	2899	3	0	0	3	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0011	2899	3	3	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0012	2898	2	0	0	0	0	2	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0013	2898	2	1	1	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0014	2900	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0015	2872	1	0	0	1	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0016	2899	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0017	2900	1	0	0	1	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0018	2901	1	0	0	1	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0019	2901	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0020	2900	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0021	2898	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0022	2898	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0023	2898	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0024	2898	1	0	1	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0025	2899	1	0	0	0	0	1	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0026	2899	1	0	0	0	0	1	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0027	2899	1	0	0	1	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0028	2899	1	0	0	1	0	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0029	2899	1	0	0	0	0	1	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0030	2899	1	0	0	0	1	0	copy fasta	ANAPC16	chr10	72211012	72240860
ANAPC16_chr10_72211012_72240860	0/0	t0031	2898	1	1	0	0	0	0	copy fasta	ANAPC16	chr10	72211012	72240860