Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANHX_chr12_133213312_133240877	1/0	t0003	667	47	2	21	16	1	6	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0004	667	37	3	1	28	0	5	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0005	667	8	5	3	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0006	667	4	0	0	0	0	4	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0007	667	3	0	0	3	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0008	667	3	2	1	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0009	667	2	2	0	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0010	667	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0011	667	1	1	0	0	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0012	667	1	0	0	1	0	0	copy fasta	ANHX	chr12	133213312	133240877
ANHX_chr12_133213312_133240877	0/0	t0013	667	1	0	0	0	0	1	copy fasta	ANHX	chr12	133213312	133240877
ANK1_chr8_41648225_41802622	0/1	t0001	2641	103	28	24	35	5	10	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0002	2648	98	18	21	41	4	14	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0003	2633	20	8	0	9	1	2	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	1/0	t0004	2650	8	7	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0005	2637	6	6	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0006	2641	5	4	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0007	2652	4	3	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0008	2636	4	0	1	0	0	3	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0009	2637	3	1	1	0	0	1	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0010	2654	2	2	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0011	2652	2	0	0	0	0	2	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0012	2643	2	0	2	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0013	2641	2	0	2	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0014	2640	2	0	0	0	1	1	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0015	2647	2	0	0	1	1	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0016	2652	1	0	1	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0017	2651	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0018	2639	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0019	2641	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0020	2641	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0021	2649	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0022	2650	1	0	0	0	0	1	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0023	2648	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0024	2648	1	0	0	1	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0025	2634	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0026	2634	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0027	2641	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0028	2641	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0029	2640	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK1_chr8_41648225_41802622	0/0	t0030	2633	1	1	0	0	0	0	copy fasta	ANK1	chr8	41648225	41802622
ANK2_chr4_113044653_113388736	1/1	t0001	2342	166	66	26	45	4	23	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0002	2342	4	1	3	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0003	2342	2	1	1	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0004	2342	1	0	0	1	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0005	2342	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0006	2342	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0007	2342	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0008	2342	1	1	0	0	0	0	copy fasta	ANK2	chr4	113044653	113388736
ANK2_chr4_113044653_113388736	0/0	t0009	2342	1	0	0	0	0	1	copy fasta	ANK2	chr4	113044653	113388736