Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD10_chr13_110873540_110920069	0/0	t0005	1233	3	0	0	2	0	1	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0006	1233	3	0	3	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0007	1233	3	2	1	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/1	t0008	1233	2	0	0	0	1	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0009	1233	1	1	0	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0010	1233	1	1	0	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0011	1233	1	0	0	1	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0012	1233	1	1	0	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0013	1233	1	0	0	1	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0014	1233	1	1	0	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0015	1233	1	0	0	1	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0016	1233	1	0	0	1	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0017	1233	1	0	1	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD11_chr16_89262630_89495561	1/0	t0001	1310	227	60	50	74	12	30	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/1	t0002	1310	61	10	7	32	3	8	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0003	1310	11	10	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0004	1310	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0005	1310	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0006	1310	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0007	1310	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0008	1310	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0009	1310	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0010	1330	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0011	1294	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0012	1310	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	t0013	1310	1	0	0	0	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD12_chr18_9131781_9290985	1/0	t0001	5096	67	8	11	37	3	7	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0002	5097	24	0	3	14	0	7	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0003	5096	24	6	5	8	1	4	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0004	5093	23	1	2	20	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0005	5098	19	3	1	13	0	2	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0006	5096	16	8	5	0	1	2	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0007	5096	9	0	7	0	1	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0008	5097	9	1	1	6	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0009	5096	8	8	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0010	5099	6	0	0	6	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0011	5092	6	0	1	5	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0012	5093	5	0	2	0	3	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0013	5096	5	5	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0014	5094	4	3	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0015	5096	4	4	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/1	t0016	5097	4	1	1	0	1	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0017	5096	4	4	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0018	5094	3	1	0	2	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0019	5096	3	2	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0020	5096	3	0	2	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0021	5096	3	0	0	3	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0022	5097	3	2	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0023	5096	3	0	0	3	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0024	5095	2	0	0	0	1	1	copy fasta	ANKRD12	chr18	9131781	9290985