Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD23_chr2_96832912_96849021	0/0	t0009	1667	2	2	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0010	1668	2	2	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0011	1667	2	0	2	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0012	1667	2	0	1	0	0	1	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0013	1667	1	1	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0014	1667	1	1	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0015	1667	1	0	0	0	0	1	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0016	1667	1	0	1	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0017	1667	1	0	1	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0018	1667	1	0	0	1	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	t0019	1667	1	0	0	0	0	1	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD24_chr19_4177689_4229814	1/1	t0001	398	233	64	57	64	18	28	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0002	398	108	13	13	73	0	9	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0003	398	5	5	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0004	398	5	5	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0005	398	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0006	398	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0007	398	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0008	398	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	t0009	398	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD26_chr10_26999116_27105494	1/1	t0001	1643	200	59	54	55	4	26	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0002	1640	55	0	8	41	1	5	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0003	1644	42	0	0	38	0	4	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0004	1644	38	10	1	25	2	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0005	1644	6	2	2	0	0	2	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0006	1643	4	3	0	0	1	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0007	1640	3	3	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0008	1640	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0009	1643	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0010	1644	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0011	1644	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0012	1643	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0013	1643	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0014	1644	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0015	1644	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	t0016	1644	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD27_chr19_32592006_32680180	0/0	t0001	1278	95	2	17	58	7	11	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	1/1	t0002	1280	78	18	22	12	4	20	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0003	1280	70	45	1	23	1	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0004	1280	45	0	1	37	0	7	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0005	1259	21	5	1	12	1	2	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0006	1280	11	9	2	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0007	1280	8	0	3	5	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0008	1280	6	4	1	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0009	1280	4	4	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0010	1280	2	2	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0011	1278	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0012	1278	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0013	1280	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	t0014	1278	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180