Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD44_chr2_196981662_197315780	0/0	t0013	3107	1	0	0	0	1	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	t0014	3107	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	t0015	3106	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	t0016	3106	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	t0017	3108	1	0	0	0	0	1	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	t0018	3106	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	t0019	3107	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD45_chr1_173603336_173674851	1/1	t0001	1860	254	20	48	156	8	20	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0002	1891	31	30	1	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0003	1891	19	17	2	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0004	1860	7	6	1	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0005	1860	6	0	0	6	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0006	1860	5	0	0	5	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0007	1881	5	5	0	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0008	1860	3	0	0	3	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0009	1870	3	0	3	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0010	1860	3	0	1	0	2	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0011	1860	1	0	0	1	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0012	1891	1	1	0	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0013	1891	1	1	0	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0014	1850	1	0	0	1	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0015	1881	1	1	0	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	t0016	1881	1	1	0	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD46_chr8_100515772_100564759	1/0	t0001	1963	225	34	46	104	8	32	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0002	1963	69	14	13	29	4	9	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0003	1963	58	19	12	21	1	5	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0004	1963	14	13	1	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/1	t0005	1963	6	0	2	1	0	2	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0006	1963	5	0	2	2	1	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0007	1963	5	5	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0008	1963	4	4	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0009	1963	2	0	0	2	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0010	1963	2	0	0	0	0	2	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0011	1963	2	0	0	2	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0012	1963	2	2	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0013	1963	1	0	0	1	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0014	1963	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0015	1963	1	0	0	1	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0016	1963	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0017	1963	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	t0018	1963	1	0	0	1	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD49_chr11_94488984_94504578	1/1	t0001	1189	396	88	71	181	15	39	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0002	1189	44	0	5	29	2	8	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0003	1189	4	2	2	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0004	1189	3	0	0	2	0	1	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0005	1189	2	0	0	0	1	1	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0006	1189	2	2	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0007	1189	1	0	0	0	0	1	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0008	1189	1	0	0	1	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	t0009	1189	1	1	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578