Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1G1_chr16_71724000_71813834	0/0	t0013	4134	6	0	0	6	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0014	4133	5	1	1	0	1	2	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0015	4134	5	4	0	0	1	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0016	4133	2	2	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0017	4134	2	0	0	1	1	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0018	4135	2	1	1	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0019	4133	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0020	4134	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0021	4135	1	0	0	0	0	1	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0022	4136	1	0	0	0	0	1	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0023	4136	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0024	4137	1	0	0	0	0	1	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0025	4135	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0026	4134	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0027	4134	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0028	4134	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0029	4134	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/1	t0030	4136	1	0	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0031	4135	1	0	0	0	0	1	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0032	4135	1	0	0	0	0	1	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0033	4135	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0034	4136	1	0	1	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0035	4135	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0036	4135	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0037	4137	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0038	4137	1	1	0	0	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0039	4135	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	t0040	4134	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G2_chr14_23554567_23572791	1/1	t0001	241	395	100	72	163	16	42	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	t0002	241	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1M1_chr19_16192911_16250906	0/0	t0001	11551	28	1	9	14	0	4	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0002	11570	20	2	2	11	2	3	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0003	11589	9	0	2	2	0	5	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0004	11615	9	0	1	8	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0005	11571	6	0	3	1	0	2	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0006	11556	6	6	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0007	11574	5	0	3	2	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0008	11620	5	0	0	5	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0009	11556	5	5	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0010	11569	4	0	1	3	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0011	11572	4	0	3	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0012	11575	4	0	3	0	1	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0013	11592	4	0	2	1	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0014	11550	4	0	1	3	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0015	11570	3	0	0	3	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0016	11575	3	0	0	3	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0017	11572	3	0	2	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0018	11552	3	0	0	3	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0019	11552	3	0	1	2	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0020	11615	3	3	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906