Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1M1_chr19_16192911_16250906	0/0	t0021	11573	2	0	0	0	0	2	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0022	11571	2	0	2	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0023	11568	2	1	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0024	11579	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0025	11574	2	0	0	0	0	2	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0026	11591	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0027	11599	2	1	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0028	11602	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0029	11612	2	1	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0030	11613	2	1	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0031	11618	2	0	0	2	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0032	11621	2	0	0	2	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0033	11622	2	0	0	2	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0034	11546	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0035	11549	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0036	11623	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0037	11592	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0038	11546	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0039	11558	2	1	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0040	11564	2	2	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0041	11572	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0042	11581	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0043	11558	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0044	11574	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0045	11574	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0046	11569	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0047	11570	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0048	11571	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0049	11573	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0050	11579	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0051	11547	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0052	11558	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0053	11560	1	0	0	0	1	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0054	11559	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0055	11560	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0056	11559	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0057	11567	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0058	11572	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0059	11572	1	0	0	0	1	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0060	11558	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0061	11566	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0062	11567	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0063	11573	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0064	11571	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0065	11572	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0066	11571	1	0	0	0	1	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0067	11576	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0068	11570	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0069	11568	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0070	11575	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906