Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1M1_chr19_16192911_16250906	0/0	t0071	11569	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0072	11574	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0073	11569	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0074	11570	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0075	11571	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0076	11576	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0077	11578	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0078	11580	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0079	11576	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0080	11561	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0081	11572	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0082	11544	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0083	11565	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0084	11570	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0085	11588	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0086	11588	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0087	11589	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	1/0	t0088	11588	1	0	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0089	11589	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0090	11591	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0091	11598	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0092	11590	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/1	t0093	11591	1	0	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0094	11592	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0095	11593	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0096	11597	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0097	11590	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0098	11592	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0099	11593	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0100	11591	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0101	11593	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0102	11589	1	0	0	0	1	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0103	11590	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0104	11598	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0105	11579	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0106	11591	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0107	11578	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0108	11593	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0109	11589	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0110	11599	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0111	11585	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0112	11557	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0113	11569	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0114	11554	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0115	11597	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0116	11617	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0117	11624	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0118	11597	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0119	11622	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0120	11612	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906