Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1M1_chr19_16192911_16250906	0/0	t0121	11618	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0122	11620	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0123	11619	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0124	11585	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0125	11584	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0126	11591	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0127	11593	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0128	11613	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0129	11618	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0130	11616	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0131	11618	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0132	11617	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0133	11617	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0134	11620	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0135	11619	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0136	11620	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0137	11617	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0138	11616	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0139	11615	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0140	11618	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0141	11619	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0142	11614	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0143	11616	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0144	11621	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0145	11624	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0146	11616	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0147	11617	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0148	11619	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0149	11616	1	0	0	0	1	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0150	11595	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0151	11615	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0152	11578	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0153	11590	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0154	11554	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0155	11558	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0156	11552	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0157	11553	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0158	11553	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0159	11557	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0160	11556	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0161	11551	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0162	11556	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0163	11555	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0164	11558	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0165	11588	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0166	11555	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0167	11561	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0168	11556	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0169	11559	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0170	11558	1	0	0	1	0	0	copy fasta	AP1M1	chr19	16192911	16250906