Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1M1_chr19_16192911_16250906	0/0	t0171	11557	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0172	11552	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0173	11558	1	0	1	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0174	11561	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0175	11559	1	0	0	0	0	1	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0176	11562	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	t0177	11581	1	1	0	0	0	0	copy fasta	AP1M1	chr19	16192911	16250906
AP1M2_chr19_10567671_10592312	0/1	t0001	477	226	74	40	63	14	34	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0002	477	95	5	9	81	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0003	475	48	8	16	15	1	8	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0004	477	10	0	0	10	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	1/0	t0005	477	7	0	5	0	1	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0006	477	2	0	0	2	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0007	477	1	0	0	1	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0008	477	1	0	0	1	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0009	477	1	0	0	0	0	1	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0010	475	1	0	0	0	0	1	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0011	477	1	1	0	0	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	t0012	477	1	0	0	1	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1S1_chr7_101149476_101166276	0/1	t0001	756	193	37	50	80	8	17	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0002	750	139	21	13	79	3	23	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0003	750	41	22	8	4	2	5	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	1/0	t0004	750	33	3	3	19	3	4	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0005	750	17	0	0	17	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0006	750	6	6	0	0	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0007	750	1	1	0	0	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0008	756	1	0	0	1	0	0	copy fasta	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	t0009	756	1	0	0	0	0	1	copy fasta	AP1S1	chr7	101149476	101166276
AP1S2_chrX_15820806_15859813	0/1	t0001	1647	101	26	19	40	2	13	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0002	1645	84	14	12	49	4	5	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0003	1646	60	4	4	47	0	5	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	1/0	t0004	1646	50	19	10	11	3	6	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0005	1646	9	1	7	1	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0006	1645	5	5	0	0	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0007	1647	2	1	1	0	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0008	1648	2	0	0	1	0	1	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0009	1646	1	0	0	1	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0010	1646	1	0	1	0	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0011	1644	1	0	0	1	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0012	1645	1	0	0	1	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S2_chrX_15820806_15859813	0/0	t0013	1646	1	0	0	1	0	0	copy fasta	AP1S2	chrX	15820806	15859813
AP1S3_chr2_223750326_223842582	0/1	t0001	3521	68	7	11	35	2	12	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0002	3536	45	19	1	20	0	5	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0003	3535	32	1	4	23	0	4	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0004	3524	23	0	9	8	1	5	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0005	3524	20	1	6	12	1	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0006	3548	13	0	1	12	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0007	3523	12	3	1	5	0	3	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0008	3538	7	7	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0009	3527	7	7	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582