Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABL1_chr9_130830254_130892675	0/1	t0001	2189	145	13	36	68	5	22	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0002	2189	28	0	11	13	2	2	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0003	2189	19	18	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0004	2189	16	6	8	0	1	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0005	2189	11	7	3	0	0	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0006	2189	7	3	4	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0007	2189	6	5	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0008	2189	6	6	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0009	2189	5	5	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0010	2189	3	3	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0011	2189	3	3	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0012	2189	2	2	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0013	2189	2	2	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0014	2189	2	2	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0015	2169	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0016	2169	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0017	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0018	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0019	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0020	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0021	2189	1	0	0	1	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0022	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0023	2189	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0024	2189	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0025	2189	1	0	0	0	0	1	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0026	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0027	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0028	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0029	2173	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0030	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0031	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0032	2189	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0033	2188	1	0	1	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0034	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0035	2189	1	1	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	1/0	t0036	2186	1	0	0	0	0	0	copy fasta	ABL1	chr9	130830254	130892675
ABL1_chr9_130830254_130892675	0/0	t0037	2189	1	0	0	0	0	1	copy fasta	ABL1	chr9	130830254	130892675
ABL2_chr1_179094330_179234677	0/0	t0001	8663	44	10	6	20	1	7	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0002	8664	26	9	2	11	2	2	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0003	8675	18	1	9	6	0	2	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0004	8674	17	1	6	6	3	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0005	8660	17	0	0	13	1	3	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0006	8676	12	0	2	8	0	2	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0007	8666	11	0	2	9	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/1	t0008	8664	11	5	2	2	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0009	8663	10	3	2	4	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0010	8670	7	0	2	4	1	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0011	8661	7	1	0	5	0	1	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0012	8675	5	0	1	4	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABL2_chr1_179094330_179234677	0/0	t0013	8674	5	0	0	5	0	0	copy fasta	ABL2	chr1	179094330	179234677