Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABR_chr17_998519_1184981	0/0	t0072	2814	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0073	2814	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0074	2814	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0075	2814	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0076	2814	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0077	2814	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0078	2816	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0079	2816	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0080	2819	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0081	2816	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0082	2816	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0083	2816	1	0	1	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0084	2816	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0085	2816	1	0	1	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0086	2816	1	0	0	1	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0087	2816	1	0	1	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0088	2816	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0089	2816	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0090	2814	1	0	0	0	0	1	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0091	2814	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABR_chr17_998519_1184981	0/0	t0092	2816	1	1	0	0	0	0	copy fasta	ABR	chr17	998519	1184981
ABT1_chr6_26591953_26605739	1/0	t0001	2125	290	36	56	146	9	42	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0002	2125	57	39	4	14	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/1	t0003	2125	20	8	5	2	1	3	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0004	2125	16	0	4	9	3	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0005	2125	6	0	5	0	1	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0006	2125	5	0	0	5	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0007	2125	3	3	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0008	2125	2	0	0	2	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0009	2125	2	2	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0010	2139	1	1	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0011	2125	1	0	0	0	0	1	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0012	2125	1	1	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0013	2125	1	0	1	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0014	2125	1	1	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0015	2125	1	0	1	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0016	2125	1	1	0	0	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0017	2125	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABT1_chr6_26591953_26605739	0/0	t0018	2135	1	0	0	1	0	0	copy fasta	ABT1	chr6	26591953	26605739
ABTB1_chr3_127667952_127685926	1/1	t0001	526	392	66	74	189	18	43	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0002	526	23	20	3	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0003	526	7	7	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0004	526	6	0	0	6	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0005	526	4	0	0	4	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0006	526	1	0	0	0	0	1	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0007	526	1	1	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0008	526	1	0	1	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0009	526	1	0	1	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0010	526	1	0	0	1	0	0	copy fasta	ABTB1	chr3	127667952	127685926
ABTB1_chr3_127667952_127685926	0/0	t0011	526	1	1	0	0	0	0	copy fasta	ABTB1	chr3	127667952	127685926