Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACADSB_chr10_123004006_123063290	0/0	t0043	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0044	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0045	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0046	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0047	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0048	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0049	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0050	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0051	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0052	4550	1	0	0	0	1	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0053	4550	1	1	0	0	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0054	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0055	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADSB_chr10_123004006_123063290	0/0	t0056	4550	1	0	0	1	0	0	copy fasta	ACADSB	chr10	123004006	123063290
ACADS_chr12_120720826_120745008	1/0	t0001	621	240	52	34	114	11	28	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/1	t0002	621	62	7	24	17	3	10	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0003	621	56	0	0	53	0	3	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0004	621	31	11	14	0	4	2	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0005	621	9	7	2	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0006	621	9	8	1	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0007	621	8	7	1	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0008	621	2	0	0	2	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0009	621	2	2	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0010	621	2	0	0	2	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0011	621	1	1	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0012	621	1	1	0	0	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0013	621	1	0	0	1	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0014	621	1	0	0	1	0	0	copy fasta	ACADS	chr12	120720826	120745008
ACADS_chr12_120720826_120745008	0/0	t0015	621	1	0	0	0	0	1	copy fasta	ACADS	chr12	120720826	120745008
ACADVL_chr17_7214938_7230266	1/1	t0001	217	396	95	73	170	16	40	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	t0002	217	1	1	0	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACADVL_chr17_7214938_7230266	0/0	t0003	217	1	0	1	0	0	0	copy fasta	ACADVL	chr17	7214938	7230266
ACAN_chr15_88798436_88880353	1/1	t0001	1254	333	61	75	141	14	40	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0002	1254	8	6	2	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0003	1254	6	3	2	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0004	1254	4	3	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0005	1254	4	4	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0006	1254	3	3	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0007	1254	2	2	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0008	1254	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0009	1254	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0010	1254	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0011	1254	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0012	1254	1	0	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0013	1254	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0014	1254	1	0	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	t0015	1254	1	1	0	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAP1_chr17_7331529_7356477	1/1	t0001	289	270	29	57	143	12	27	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	t0002	289	174	67	26	57	4	20	copy fasta	ACAP1	chr17	7331529	7356477
ACAP1_chr17_7331529_7356477	0/0	t0003	289	1	0	1	0	0	0	copy fasta	ACAP1	chr17	7331529	7356477