Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AADACL4_chr1_12639085_12672076	1/1	t0001	804	262	44	60	126	9	21	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0002	804	13	10	1	0	1	1	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0003	803	12	5	2	0	0	5	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0004	804	9	9	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0005	804	6	6	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0006	804	2	2	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0007	804	1	1	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0008	803	1	1	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0009	804	1	1	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0010	804	1	0	1	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0011	804	1	0	0	0	0	1	copy fasta	AADACL4	chr1	12639085	12672076
AADACL4_chr1_12639085_12672076	0/0	t0012	804	1	1	0	0	0	0	copy fasta	AADACL4	chr1	12639085	12672076
AADAC_chr3_151809116_151833488	1/0	t0001	364	235	46	39	120	13	16	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	t0002	364	200	48	40	85	4	23	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/1	t0003	364	2	0	0	0	0	1	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	t0004	364	1	0	0	0	1	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	t0005	364	1	0	1	0	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAC_chr3_151809116_151833488	0/0	t0006	364	1	0	0	1	0	0	copy fasta	AADAC	chr3	151809116	151833488
AADAT_chr4_170055222_170094956	1/0	t0001	973	349	88	54	149	17	40	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/1	t0002	973	13	3	3	2	1	3	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	t0003	972	10	0	4	1	0	5	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	t0004	973	2	1	1	0	0	0	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	t0005	973	1	1	0	0	0	0	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	t0006	973	1	0	0	1	0	0	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	t0007	973	1	1	0	0	0	0	copy fasta	AADAT	chr4	170055222	170094956
AADAT_chr4_170055222_170094956	0/0	t0008	973	1	0	0	1	0	0	copy fasta	AADAT	chr4	170055222	170094956
AAGAB_chr15_67195667_67259661	0/0	t0001	2185	113	23	17	54	5	14	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/1	t0002	2185	107	31	16	46	4	9	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0003	2186	103	5	24	60	5	9	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	1/0	t0004	2185	27	12	0	14	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0005	2185	4	0	0	4	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0006	2186	3	3	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0007	2186	3	3	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0008	2185	2	2	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0009	2185	2	0	2	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0010	2185	2	2	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0011	2186	2	0	2	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0012	2185	2	0	0	0	0	2	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0013	2185	2	0	0	2	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0014	2185	1	0	1	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0015	2186	1	1	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0016	2185	1	0	0	1	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0017	2186	1	1	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0018	2185	1	0	0	0	0	1	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0019	2185	1	0	0	0	0	1	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0020	2185	1	0	0	1	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAGAB_chr15_67195667_67259661	0/0	t0021	2185	1	1	0	0	0	0	copy fasta	AAGAB	chr15	67195667	67259661
AAK1_chr2_69452997_69648739	0/0	t0001	18273	15	0	3	10	1	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0002	18271	14	3	0	9	0	2	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0003	18274	13	0	6	6	0	1	copy fasta	AAK1	chr2	69452997	69648739