Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACSF3_chr16_89088852_89161233	0/0	t0040	2367	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0041	2367	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0042	2363	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	1/0	t0043	2365	1	0	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0044	2367	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0045	2367	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0046	2369	1	0	1	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0047	2367	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0048	2367	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0049	2367	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0050	2369	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0051	2388	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0052	2388	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0053	2388	1	0	0	0	0	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0054	2363	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0055	2363	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0056	2367	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0057	2369	1	0	1	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0058	2369	1	0	0	1	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0059	2367	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0060	2388	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	t0061	2388	1	1	0	0	0	0	copy fasta	ACSF3	chr16	89088852	89161233
ACSL1_chr4_184750595_184830968	0/0	t0001	1616	166	30	20	98	5	13	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/1	t0002	1616	143	55	22	49	4	12	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0003	1616	45	4	13	16	3	9	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0004	1616	26	2	15	0	2	7	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0005	1616	2	0	2	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	1/0	t0006	1616	2	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0007	1616	1	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0008	1616	1	0	0	1	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0009	1616	1	0	0	1	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0010	1616	1	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0011	1616	1	0	0	1	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0012	1616	1	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0013	1616	1	0	0	0	0	1	copy fasta	ACSL1	chr4	184750595	184830968
ACSL1_chr4_184750595_184830968	0/0	t0014	1616	1	1	0	0	0	0	copy fasta	ACSL1	chr4	184750595	184830968
ACSL3_chr2_222856036_222949639	0/1	t0001	3425	81	20	21	27	5	7	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0002	3425	75	11	17	35	3	9	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0003	3425	26	24	2	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	1/0	t0004	3415	16	3	6	1	4	1	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0005	3421	9	2	3	0	1	3	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0006	3418	5	1	2	0	1	1	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0007	3425	4	4	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0008	3421	4	4	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0009	3425	4	3	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0010	3425	3	3	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0011	3425	3	0	0	3	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0012	3425	2	2	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0013	3425	2	2	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0014	3414	2	2	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639