Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACSL3_chr2_222856036_222949639	0/0	t0015	3426	2	0	1	0	0	1	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0016	3425	2	2	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0017	3426	2	0	0	2	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0018	3425	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0019	3418	1	0	0	0	0	1	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0020	3418	1	0	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0021	3415	1	0	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0022	3425	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0023	3425	1	0	0	0	0	1	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0024	3425	1	0	0	1	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0025	3425	1	0	0	1	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0026	3425	1	0	1	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL3_chr2_222856036_222949639	0/0	t0027	3425	1	1	0	0	0	0	copy fasta	ACSL3	chr2	222856036	222949639
ACSL4_chrX_109636335_109738257	1/1	t0001	2879	201	47	41	72	11	28	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0002	2879	7	1	0	6	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0003	2879	5	5	0	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0004	2879	2	2	0	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0005	2879	2	1	1	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0006	2879	1	1	0	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0007	2880	1	0	0	1	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0008	2884	1	0	0	1	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0009	2879	1	1	0	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL4_chrX_109636335_109738257	0/0	t0010	2879	1	0	1	0	0	0	copy fasta	ACSL4	chrX	109636335	109738257
ACSL5_chr10_112369116_112433376	1/0	t0001	1202	176	43	32	65	8	27	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/1	t0002	1202	144	45	25	54	2	17	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	t0003	1202	38	1	6	29	2	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	t0004	1202	3	3	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	t0005	1202	1	0	1	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	t0006	1202	1	1	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL5_chr10_112369116_112433376	0/0	t0007	1202	1	1	0	0	0	0	copy fasta	ACSL5	chr10	112369116	112433376
ACSL6_chr5_131944973_132016658	1/1	t0001	4367	126	15	29	63	6	11	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0002	4365	111	11	20	69	2	9	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0003	4366	25	19	6	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0004	4366	11	11	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0005	4366	7	5	2	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0006	4367	5	1	4	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0007	4367	5	4	1	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0008	4367	3	3	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0009	4367	3	1	0	0	2	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0010	4365	3	0	0	0	0	3	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0011	4366	2	2	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0012	4365	2	0	2	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0013	4366	2	2	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0014	4365	2	0	2	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0015	4366	2	2	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0016	4367	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0017	4367	1	0	0	0	0	1	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0018	4367	1	1	0	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0019	4367	1	0	1	0	0	0	copy fasta	ACSL6	chr5	131944973	132016658
ACSL6_chr5_131944973_132016658	0/0	t0020	4367	1	0	0	1	0	0	copy fasta	ACSL6	chr5	131944973	132016658