Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTMAP_chr19_40735861_40755477	0/0	t0012	2247	6	3	3	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0013	2245	5	0	0	5	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0014	2245	4	0	0	4	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0015	2245	3	3	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0016	2247	3	3	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0017	2247	3	3	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0018	2245	3	0	0	3	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0019	2245	2	0	0	2	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0020	2247	2	0	0	2	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0021	2247	2	2	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0022	2247	2	0	0	2	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0023	2246	2	2	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0024	2247	2	0	0	1	0	1	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0025	2247	2	0	0	0	0	2	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0026	2248	2	0	0	2	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0027	2247	2	0	1	0	1	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0028	2245	2	2	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0029	2248	2	0	0	1	0	1	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0030	2247	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0031	2247	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0032	2247	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0033	2245	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0034	2245	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0035	2245	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0036	2245	1	0	0	0	0	1	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0037	2247	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0038	2247	1	0	0	0	0	1	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0039	2247	1	0	0	0	0	1	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0040	2247	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0041	2248	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0042	2247	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0043	2247	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0044	2245	1	1	0	0	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTMAP_chr19_40735861_40755477	0/0	t0045	2245	1	0	0	1	0	0	copy fasta	ACTMAP	chr19	40735861	40755477
ACTN1_chr14_68869128_68984302	1/0	t0001	978	107	64	20	6	5	11	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/1	t0002	983	103	16	16	57	2	11	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	t0003	977	46	10	16	8	6	6	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	t0004	982	24	2	8	8	0	6	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	t0005	978	1	0	0	0	1	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	t0006	978	1	0	0	1	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	t0007	983	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN1_chr14_68869128_68984302	0/0	t0008	978	1	1	0	0	0	0	copy fasta	ACTN1	chr14	68869128	68984302
ACTN2_chr1_236681499_236769631	0/1	t0001	2188	93	1	28	43	5	15	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0002	2188	68	27	8	23	4	6	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0003	2188	49	1	4	34	1	9	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	1/0	t0004	2188	45	18	1	24	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0005	2188	27	27	0	0	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0006	2195	10	0	7	2	0	1	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0007	2185	9	0	4	5	0	0	copy fasta	ACTN2	chr1	236681499	236769631
ACTN2_chr1_236681499_236769631	0/0	t0008	2195	5	2	0	2	0	1	copy fasta	ACTN2	chr1	236681499	236769631