JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZIK1_chr19_57579145_57598890	0/0	t0012	2980	3	0	0	1	1	1	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0013	2981	3	3	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0014	2982	3	0	1	2	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0015	2828	2	2	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0016	2828	1	0	1	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0017	2828	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0018	2828	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0019	2818	1	0	1	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0020	2827	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0021	2828	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0022	2828	1	0	0	0	0	1	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0023	2828	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0024	2828	1	0	1	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0025	2828	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0026	2829	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0027	2828	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0028	2981	1	0	1	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0029	2828	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0030	2982	1	0	0	0	0	1	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0031	2979	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0032	2980	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0033	2982	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0034	2983	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0035	2983	1	0	0	1	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0036	2980	1	1	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIM2_chr19_56769547_56845726	1/0	t0001	600	230	69	41	93	7	19	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/1	t0002	600	76	2	16	39	5	13	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0003	601	48	14	11	11	4	8	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0004	601	5	0	3	1	0	1	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0005	600	2	1	1	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0006	600	2	0	2	0	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0007	600	2	0	0	2	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0008	600	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0009	601	1	0	0	0	0	1	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0010	600	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0011	601	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM2_chr19_56769547_56845726	0/0	t0012	601	1	0	0	1	0	0	copy fasta	ZIM2	chr19	56769547	56845726
ZIM3_chr19_57129096_57150202	1/1	t0001	1209	144	35	26	60	4	17	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0002	1209	119	5	34	47	10	23	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0003	1209	77	6	7	63	0	1	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0004	1209	18	16	2	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0005	1209	14	0	4	10	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0006	1209	9	8	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0007	1209	9	8	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0008	1209	5	5	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0009	1209	5	5	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0010	1209	3	0	2	0	0	1	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0011	1209	2	2	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0012	1209	1	0	0	0	0	1	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0013	1209	1	0	0	1	0	0	copy fasta	ZIM3	chr19	57129096	57150202