JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZKSCAN8_chr6_28136883_28164460	0/0	t0004	5684	38	5	9	21	0	3	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0005	5683	11	10	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0006	5683	7	0	6	0	1	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0007	5683	6	0	0	3	0	3	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0008	5683	6	0	0	6	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0009	5683	5	5	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0010	5683	5	5	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0011	5684	4	0	0	4	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0012	5681	4	0	0	4	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0013	5684	3	0	0	3	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0014	5681	3	3	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0015	5683	2	0	0	0	0	2	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0016	5684	2	0	0	2	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0017	5683	2	2	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0018	5683	2	0	0	2	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0019	5683	2	0	1	0	1	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0020	5683	2	0	2	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0021	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0022	5684	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0023	5683	1	0	0	1	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0024	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0025	5683	1	0	0	1	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0026	5683	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0027	5684	1	0	0	1	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0028	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0029	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0030	5683	1	0	0	1	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0031	5683	1	0	0	0	0	1	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0032	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0033	5684	1	0	0	0	0	1	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0034	5684	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0035	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0036	5683	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0037	5683	1	0	1	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0038	5683	1	1	0	0	0	0	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZMAT1_chrX_101877290_101937027	1/0	t0001	1240	143	15	26	86	3	12	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/1	t0002	1239	67	38	11	2	4	11	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	t0003	1239	36	16	6	9	4	1	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	t0004	1240	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	t0005	1240	1	1	0	0	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	t0006	1239	1	0	0	1	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT1_chrX_101877290_101937027	0/0	t0007	1239	1	1	0	0	0	0	copy fasta	ZMAT1	chrX	101877290	101937027
ZMAT2_chr5_140695447_140711686	0/1	t0001	945	184	36	27	92	10	18	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	1/0	t0002	945	152	27	27	74	5	18	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	t0003	945	36	28	8	0	0	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	t0004	945	3	3	0	0	0	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	t0005	945	1	0	0	1	0	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	t0006	945	1	1	0	0	0	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	t0007	945	1	0	0	0	1	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT2_chr5_140695447_140711686	0/0	t0008	945	1	0	0	1	0	0	copy fasta	ZMAT2	chr5	140695447	140711686