JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF10_chr12_133125627_133164465	0/0	t0015	2685	1	0	0	1	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0016	2685	1	0	0	1	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0017	2685	1	0	0	0	1	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0018	2685	1	0	0	1	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF112_chr19_44321555_44361680	0/1	t0001	937	251	23	57	133	12	25	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	1/0	t0002	937	123	36	18	52	2	14	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0003	936	15	12	0	1	2	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0004	937	15	13	2	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0005	937	2	2	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0006	937	1	0	0	0	0	1	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0007	937	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0008	937	1	1	0	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF112_chr19_44321555_44361680	0/0	t0009	937	1	0	1	0	0	0	copy fasta	ZNF112	chr19	44321555	44361680
ZNF114_chr19_48265081_48292608	0/0	t0001	1246	208	33	43	106	5	21	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	1/0	t0002	1246	116	36	21	45	1	12	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/1	t0003	1246	65	9	7	31	3	14	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0004	1246	7	7	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0005	1247	6	5	0	1	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0006	1246	6	0	0	6	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0007	1246	5	3	2	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0008	1246	4	1	0	0	0	3	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0009	1246	2	1	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0010	1246	1	0	0	0	1	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0011	1246	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0012	1247	1	0	0	1	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0013	1246	1	1	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0014	1246	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0015	1246	1	1	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0016	1246	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0017	1247	1	0	1	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0018	1246	1	0	0	1	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0019	1246	1	1	0	0	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF114_chr19_48265081_48292608	0/0	t0020	1246	1	0	0	1	0	0	copy fasta	ZNF114	chr19	48265081	48292608
ZNF117_chr7_64966772_64996036	0/1	t0001	7629	113	10	25	56	7	14	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0002	7620	108	7	11	68	9	13	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0003	7629	38	0	5	33	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0004	7631	28	0	4	24	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0005	7626	27	20	2	5	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0006	7629	16	4	6	1	0	5	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0007	7633	11	11	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0008	7629	5	5	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0009	7625	5	3	2	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0010	7627	4	4	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0011	7629	4	0	0	3	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0012	7629	4	4	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0013	7629	4	0	2	0	1	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0014	7633	4	3	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	1/0	t0015	7633	4	2	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0016	7628	3	0	0	3	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0017	7629	3	0	3	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036