JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF121_chr19_9555329_9589504	0/0	t0051	5818	2	0	1	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0052	5821	2	0	0	2	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0053	5821	2	0	0	2	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0054	5820	2	0	0	2	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0055	5821	2	0	2	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0056	5822	2	0	0	2	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0057	5823	2	0	0	2	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0058	5825	2	0	2	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0059	5827	2	0	2	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0060	5779	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0061	5771	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0062	5770	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0063	5771	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0064	5780	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0065	5781	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0066	5773	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0067	5770	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0068	5769	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0069	5771	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0070	5770	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0071	5772	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0072	5772	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0073	5771	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0074	5769	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0075	5770	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0076	5772	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0077	5772	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0078	5773	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0079	5775	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0080	5774	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0081	5771	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0082	5773	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0083	5772	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0084	5767	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0085	5768	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0086	5774	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0087	5772	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0088	5793	1	0	0	0	1	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0089	5783	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0090	5784	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0091	5783	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0092	5791	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0093	5793	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0094	5799	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0095	5802	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0096	5803	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0097	5803	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0098	5806	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0099	5804	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0100	5787	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504