JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF121_chr19_9555329_9589504	0/0	t0101	5798	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0102	5800	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0103	5805	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0104	5801	1	0	0	0	1	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/1	t0105	5801	1	0	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0106	5802	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0107	5801	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0108	5802	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0109	5802	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0110	5803	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0111	5802	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0112	5802	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0113	5802	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0114	5808	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0115	5804	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0116	5802	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0117	5805	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0118	5804	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0119	5804	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0120	5805	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0121	5805	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0122	5803	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0123	5810	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0124	5804	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0125	5805	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0126	5804	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0127	5805	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0128	5805	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0129	5805	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0130	5813	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0131	5805	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0132	5813	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0133	5814	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0134	5810	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0135	5811	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0136	5809	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0137	5805	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0138	5796	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0139	5806	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0140	5807	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0141	5808	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0142	5808	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0143	5813	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0144	5807	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0145	5808	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0146	5809	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0147	5811	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0148	5816	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0149	5802	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0150	5819	1	0	0	0	1	0	copy fasta	ZNF121	chr19	9555329	9589504