JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF12_chr7_6683433_6711947	0/0	t0029	2982	1	0	0	0	0	1	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0030	2982	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0031	2987	1	0	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0032	2982	1	0	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF131_chr5_43115914_43181322	0/0	t0001	1421	107	17	13	57	4	16	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	1/1	t0002	1415	82	25	8	36	2	9	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0003	1414	28	0	0	27	0	1	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0004	1419	27	3	20	0	2	2	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0005	1416	14	7	1	0	0	6	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0006	1420	11	7	2	1	1	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0007	1419	10	0	2	1	2	5	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0008	1414	9	0	3	1	3	2	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0009	1415	8	6	2	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0010	1415	6	1	1	2	0	2	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0011	1414	6	3	2	0	0	1	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0012	1420	5	5	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0013	1418	4	0	0	4	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0014	1420	2	2	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0015	1416	2	0	0	2	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0016	1413	2	0	0	1	0	1	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0017	1410	2	0	0	0	0	2	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0018	1418	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0019	1419	1	0	0	0	0	1	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0020	1420	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0021	1419	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0022	1416	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0023	1412	1	0	1	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0024	1415	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0025	1416	1	1	0	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0026	1414	1	0	0	1	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0027	1415	1	0	0	1	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF131_chr5_43115914_43181322	0/0	t0028	1415	1	0	1	0	0	0	copy fasta	ZNF131	chr5	43115914	43181322
ZNF132_chr19_58427814_58445153	1/0	t0001	842	239	19	45	141	10	23	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/1	t0002	842	100	27	17	40	6	9	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	t0003	893	43	10	13	9	2	9	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	t0004	842	37	32	2	2	0	1	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	t0005	893	2	1	1	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	t0006	842	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	t0007	842	1	0	0	1	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF132_chr19_58427814_58445153	0/0	t0008	842	1	1	0	0	0	0	copy fasta	ZNF132	chr19	58427814	58445153
ZNF133_chr20_18283527_18321996	0/1	t0001	690	365	95	60	156	14	39	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	1/0	t0002	690	4	0	2	0	0	1	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	t0003	690	2	2	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF133_chr20_18283527_18321996	0/0	t0004	690	1	1	0	0	0	0	copy fasta	ZNF133	chr20	18283527	18321996
ZNF134_chr19_57609242_57629724	0/1	t0001	3639	177	28	33	89	5	21	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	1/0	t0002	3641	58	7	15	23	1	11	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0003	3633	43	11	3	26	1	2	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0004	3630	31	0	5	23	2	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0005	3635	13	0	1	10	1	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0006	3643	11	3	0	6	2	0	copy fasta	ZNF134	chr19	57609242	57629724