JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF155_chr19_43979188_44003326	0/0	t0003	943	73	17	20	31	2	3	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0004	996	32	0	12	20	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	1/0	t0005	996	26	24	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0006	996	18	11	0	0	1	6	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0007	996	5	5	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0008	996	4	0	4	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0009	943	4	4	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0010	996	2	0	0	0	0	2	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0011	996	2	0	2	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0012	996	2	2	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0013	996	2	1	0	0	0	1	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0014	943	1	0	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0015	943	1	0	0	0	1	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0016	996	1	0	0	1	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0017	943	1	0	0	1	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0018	996	1	0	0	1	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0019	943	1	0	0	1	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0020	943	1	0	1	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0021	996	1	0	0	0	0	1	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0022	943	1	1	0	0	0	0	copy fasta	ZNF155	chr19	43979188	44003326
ZNF157_chrX_47365578_47419498	1/1	t0001	996	275	57	45	126	13	32	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0002	996	13	11	2	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0003	996	3	3	0	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0004	996	2	0	0	0	0	2	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0005	996	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0006	996	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0007	997	1	0	1	0	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF157_chrX_47365578_47419498	0/0	t0008	997	1	0	0	1	0	0	copy fasta	ZNF157	chrX	47365578	47419498
ZNF160_chr19_53061614_53108422	1/0	t0001	1975	124	20	15	66	2	20	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/1	t0002	1975	90	2	31	48	3	5	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0003	1975	57	9	7	30	4	7	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0004	1975	57	22	15	9	3	8	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0005	1975	49	24	14	1	6	4	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0006	1975	4	3	1	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0007	1973	3	0	0	3	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0008	1975	3	3	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0009	1975	2	2	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0010	1975	2	0	0	2	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0011	1975	2	0	0	2	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0012	1975	1	0	0	0	0	1	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0013	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0014	1975	1	0	1	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0015	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0016	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0017	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0018	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0019	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0020	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0021	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0022	1975	1	0	0	1	0	0	copy fasta	ZNF160	chr19	53061614	53108422