JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF160_chr19_53061614_53108422	0/0	t0023	1975	1	0	0	0	0	1	copy fasta	ZNF160	chr19	53061614	53108422
ZNF160_chr19_53061614_53108422	0/0	t0024	1975	1	1	0	0	0	0	copy fasta	ZNF160	chr19	53061614	53108422
ZNF165_chr6_28075568_28094563	1/1	t0001	497	247	46	37	116	13	33	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0002	498	110	31	25	46	1	7	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0003	497	53	6	10	31	0	6	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0004	497	4	0	0	4	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0005	498	3	3	0	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0006	497	2	2	0	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0007	497	2	2	0	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0008	497	1	1	0	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0009	498	1	0	0	1	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF165_chr6_28075568_28094563	0/0	t0010	498	1	1	0	0	0	0	copy fasta	ZNF165	chr6	28075568	28094563
ZNF169_chr9_94254298_94306829	0/1	t0001	563	117	40	22	31	6	17	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0002	561	108	1	16	74	5	12	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	1/0	t0003	563	90	31	16	28	3	11	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0004	563	51	1	14	31	1	4	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0005	564	8	6	2	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0006	564	2	0	2	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0007	562	2	0	1	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0008	563	1	1	0	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0009	563	1	0	0	1	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0010	563	1	0	1	0	0	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF169_chr9_94254298_94306829	0/0	t0011	561	1	0	0	0	1	0	copy fasta	ZNF169	chr9	94254298	94306829
ZNF16_chr8_144925358_144955880	1/1	t0001	474	395	97	70	178	16	32	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	t0002	474	2	0	0	0	0	2	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	t0003	474	2	0	0	0	0	2	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	t0004	474	2	0	2	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	t0005	474	2	0	0	0	0	2	copy fasta	ZNF16	chr8	144925358	144955880
ZNF16_chr8_144925358_144955880	0/0	t0006	474	1	1	0	0	0	0	copy fasta	ZNF16	chr8	144925358	144955880
ZNF174_chr16_3396215_3414364	1/1	t0001	1236	239	57	51	92	12	25	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0002	1236	90	25	23	29	5	8	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0003	1236	14	10	1	1	0	2	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0004	1236	4	0	0	0	0	4	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0005	1236	3	3	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0006	1236	2	0	1	0	0	1	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0007	1236	2	2	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0008	1236	2	0	0	0	1	1	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0009	1236	1	0	0	1	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0010	1236	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0011	1236	1	0	0	1	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0012	1236	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0013	1236	1	1	0	0	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0014	1236	1	0	0	1	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0015	1236	1	0	0	0	0	1	copy fasta	ZNF174	chr16	3396215	3414364
ZNF174_chr16_3396215_3414364	0/0	t0016	1236	1	0	0	1	0	0	copy fasta	ZNF174	chr16	3396215	3414364
ZNF175_chr19_51566283_51597510	0/0	t0001	4427	54	0	1	51	0	2	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0002	4421	32	0	3	27	0	2	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0003	4427	23	3	3	6	1	10	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0004	4421	19	17	2	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0005	4418	15	0	14	0	1	0	copy fasta	ZNF175	chr19	51566283	51597510