JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF208_chr19_21961095_22015943	0/0	t0051	5246	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0052	5245	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0053	5244	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0054	5246	1	0	1	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0055	5245	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0056	5246	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF20_chr19_12126350_12145350	1/1	t0001	1406	245	51	60	86	12	34	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0002	1407	94	26	13	46	4	5	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0003	1406	11	11	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0004	1406	4	4	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0005	1407	2	0	0	0	0	2	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0006	1406	1	0	0	1	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0007	1406	1	0	1	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0008	1407	1	0	0	1	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0009	1406	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0010	1406	1	0	0	0	0	1	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0011	1406	1	1	0	0	0	0	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0012	1406	1	0	0	0	0	1	copy fasta	ZNF20	chr19	12126350	12145350
ZNF20_chr19_12126350_12145350	0/0	t0013	1406	1	0	0	0	0	1	copy fasta	ZNF20	chr19	12126350	12145350
ZNF211_chr19_57628168_57649041	1/1	t0001	2040	236	49	45	98	10	32	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0002	2040	43	7	1	27	1	7	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0003	2040	34	0	5	26	2	1	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0004	2040	17	0	2	9	2	4	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0005	2040	11	10	0	0	1	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0006	2040	5	4	1	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0007	2040	3	3	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0008	2040	3	3	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0009	2040	3	3	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0010	2040	3	3	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0011	2040	2	2	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0012	2040	2	2	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0013	2040	2	0	0	0	2	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0014	2040	2	2	0	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0015	2040	1	0	1	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0016	2040	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0017	2040	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0018	2040	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0019	2040	1	0	1	0	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF211_chr19_57628168_57649041	0/0	t0020	2040	1	0	0	1	0	0	copy fasta	ZNF211	chr19	57628168	57649041
ZNF212_chr7_149234651_149260606	0/0	t0001	1329	108	6	21	58	6	17	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/1	t0002	1324	94	6	26	51	3	7	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0003	1324	84	31	13	37	2	1	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0004	1323	40	27	5	6	1	1	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0005	1324	26	4	9	2	3	8	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0006	1330	12	0	1	11	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0007	1332	6	1	0	5	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0008	1324	5	5	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0009	1322	4	0	0	0	0	4	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0010	1327	3	2	1	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0011	1324	3	0	0	0	1	2	copy fasta	ZNF212	chr7	149234651	149260606