JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF217_chr20_53562071_53598839	0/0	t0023	2644	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0024	2643	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0025	2642	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0026	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0027	2644	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0028	2644	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0029	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0030	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0031	2642	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0032	2644	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0033	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0034	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0035	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF219_chr14_21085077_21103655	1/1	t0001	887	203	16	51	94	10	30	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0002	887	147	64	18	48	1	16	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0003	887	8	0	0	7	1	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0004	883	8	7	1	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0005	890	8	0	0	8	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0006	888	6	0	1	4	0	1	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0007	888	3	2	1	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0008	888	2	0	0	2	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0009	887	1	0	1	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0010	887	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0011	887	1	0	1	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0012	887	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0013	887	1	1	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0014	890	1	1	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0015	887	1	0	0	0	0	1	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0016	891	1	0	0	1	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF219_chr14_21085077_21103655	0/0	t0017	887	1	1	0	0	0	0	copy fasta	ZNF219	chr14	21085077	21103655
ZNF221_chr19_43946228_43972709	0/1	t0001	528	294	39	56	150	12	36	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	1/0	t0002	529	107	48	9	38	2	9	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0003	527	11	0	11	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0004	528	6	6	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0005	529	6	6	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0006	528	2	0	2	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0007	528	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0008	528	1	0	0	1	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0009	528	1	0	0	0	1	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0010	528	1	0	1	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0011	528	1	0	0	0	0	1	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0012	528	1	0	1	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0013	529	1	1	0	0	0	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF221_chr19_43946228_43972709	0/0	t0014	529	1	0	0	0	1	0	copy fasta	ZNF221	chr19	43946228	43972709
ZNF222_chr19_44020379_44038110	1/1	t0001	139	421	96	78	199	14	32	copy fasta	ZNF222	chr19	44020379	44038110
ZNF222_chr19_44020379_44038110	0/0	t0002	139	1	0	0	1	0	0	copy fasta	ZNF222	chr19	44020379	44038110
ZNF223_chr19_44047036_44072999	0/1	t0001	951	292	64	50	132	11	34	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	1/0	t0002	951	133	30	22	67	5	8	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0003	951	2	0	0	0	2	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0004	951	1	0	1	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999