JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF22_chr10_44995923_45010326	0/0	t0010	1435	1	0	0	1	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0011	1435	1	0	0	0	0	1	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0012	1435	1	1	0	0	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0013	1429	1	0	0	1	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0014	1429	1	0	0	1	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0015	1435	1	1	0	0	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF230_chr19_43997957_44018924	0/1	t0001	2680	123	16	22	51	7	26	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0002	2680	119	12	23	71	3	10	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0003	2680	88	15	23	43	3	4	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0004	2680	22	0	3	15	1	3	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0005	2680	14	13	1	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0006	2680	10	9	1	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0007	2680	7	7	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0008	2680	5	0	0	5	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0009	2680	5	5	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0010	2680	4	4	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0011	2681	4	3	1	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0012	2680	4	0	0	0	1	3	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0013	2680	3	3	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0014	2680	3	3	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0015	2680	3	2	0	1	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0016	2680	2	2	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0017	2680	1	0	0	1	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0018	2680	1	0	0	1	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0019	2680	1	0	1	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0020	2680	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	1/0	t0021	2680	1	0	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0022	2680	1	0	1	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0023	2680	1	0	0	1	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0024	2680	1	0	0	1	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0025	2680	1	0	0	0	1	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	t0026	2680	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF232_chr17_5100736_5116878	1/1	t0001	145	365	71	77	160	15	40	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	t0002	145	39	0	0	39	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	t0003	145	16	15	1	0	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	t0004	145	9	4	0	5	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	t0005	145	1	0	0	0	1	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF233_chr19_44254886_44280317	0/1	t0001	745	293	68	56	138	6	24	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	1/0	t0002	745	59	22	14	15	1	6	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	t0003	745	52	3	6	34	1	8	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	t0004	745	3	3	0	0	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF233_chr19_44254886_44280317	0/0	t0005	745	1	0	0	1	0	0	copy fasta	ZNF233	chr19	44254886	44280317
ZNF234_chr19_44136554_44165313	0/1	t0001	2506	127	27	17	66	3	13	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	1/0	t0002	2505	116	1	23	67	3	21	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0003	2507	69	31	15	22	1	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0004	2506	9	7	0	0	2	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0005	2506	8	1	4	1	1	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0006	2507	8	0	0	8	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0007	2506	6	1	4	0	0	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0008	2506	6	0	0	6	0	0	copy fasta	ZNF234	chr19	44136554	44165313