JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF234_chr19_44136554_44165313	0/0	t0009	2506	5	5	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0010	2505	5	0	2	3	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0011	2507	4	4	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0012	2506	3	0	1	2	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0013	2506	3	3	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0014	2507	3	0	0	3	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0015	2507	2	1	1	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0016	2506	2	0	1	0	0	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0017	2504	2	0	1	0	0	1	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0018	2505	2	1	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0019	2506	2	0	2	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0020	2505	2	2	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0021	2507	1	0	1	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0022	2506	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0023	2507	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0024	2505	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0025	2505	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0026	2508	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0027	2507	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0028	2507	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0029	2508	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0030	2508	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0031	2506	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0032	2506	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0033	2506	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0034	2505	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0035	2506	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0036	2504	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0037	2507	1	0	0	1	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF234_chr19_44136554_44165313	0/0	t0038	2506	1	1	0	0	0	0	copy fasta	ZNF234	chr19	44136554	44165313
ZNF235_chr19_44281348_44310025	1/1	t0001	974	386	86	70	180	10	38	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	t0002	974	3	3	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	t0003	974	1	0	1	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	t0004	974	1	0	1	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF235_chr19_44281348_44310025	0/0	t0005	974	1	1	0	0	0	0	copy fasta	ZNF235	chr19	44281348	44310025
ZNF236_chr18_76817557_76977901	0/0	t0001	4614	72	10	13	42	1	6	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0002	4614	64	2	14	37	3	8	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/1	t0003	4612	44	3	16	18	4	2	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0004	4614	40	5	5	28	1	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0005	4615	20	3	4	6	0	7	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0006	4614	14	13	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0007	4614	9	7	2	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0008	4614	7	0	1	5	1	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0009	4614	7	6	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0010	4614	7	7	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0011	4614	6	0	0	6	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	1/0	t0012	4614	5	4	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0013	4615	4	3	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0014	4614	4	0	0	4	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0015	4614	4	4	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901