JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF254_chr19_24082187_24134968	0/0	t0011	2110	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	t0012	2110	1	0	1	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF256_chr19_57935833_57952706	1/1	t0001	324	324	42	68	174	10	28	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	t0002	324	82	45	10	18	4	5	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	t0003	320	6	0	0	0	0	6	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	t0004	324	4	4	0	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	t0005	324	2	2	0	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	t0006	324	1	0	0	0	0	1	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	t0007	324	1	1	0	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF257_chr19_22047484_22096480	0/0	t0001	2190	96	2	11	65	3	15	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0002	2189	77	13	14	42	1	7	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/1	t0003	2188	76	14	17	35	4	5	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0004	2189	28	6	6	9	0	7	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0005	2188	15	14	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0006	2188	14	3	5	3	2	1	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0007	2191	8	0	4	3	0	1	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0008	2190	8	2	0	5	1	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0009	2187	8	0	1	6	1	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0010	2189	6	6	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0011	2190	5	5	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0012	2189	4	1	0	3	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0013	2189	2	2	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0014	2188	2	2	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	1/0	t0015	2188	2	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0016	2190	2	2	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0017	2190	2	2	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0018	2188	2	0	0	2	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0019	2190	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0020	2188	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0021	2190	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0022	2191	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0023	2189	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0024	2190	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0025	2190	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0026	2188	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0027	2190	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0028	2189	1	0	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0029	2189	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0030	2189	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0031	2189	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0032	2191	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0033	2189	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0034	2190	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0035	2190	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0036	2190	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0037	2190	1	1	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0038	2187	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	t0039	2190	1	0	0	1	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF25_chr10_37944573_37981647	0/1	t0001	2782	171	43	30	67	4	26	copy fasta	ZNF25	chr10	37944573	37981647
ZNF25_chr10_37944573_37981647	0/0	t0002	2780	110	17	22	61	5	5	copy fasta	ZNF25	chr10	37944573	37981647