JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF266_chr19_9407429_9440573	0/0	t0006	1698	4	4	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0007	1696	4	4	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0008	1696	3	2	0	0	1	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0009	1694	3	2	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0010	1694	2	0	0	0	0	2	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0011	1698	2	0	0	2	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0012	1698	2	0	0	0	0	2	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0013	1694	1	1	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0014	1694	1	0	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0015	1694	1	1	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0016	1694	1	0	0	1	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0017	1698	1	0	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0018	1698	1	0	1	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	t0019	1696	1	1	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF267_chr16_31868807_31922357	0/1	t0001	1037	154	29	32	76	8	8	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	1/0	t0002	1037	46	42	3	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0003	1037	5	5	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0004	1037	2	0	2	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0005	1037	1	0	0	1	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0006	1037	1	0	1	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0007	1037	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0008	1037	1	0	0	1	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0009	1037	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0010	1037	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0011	1037	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0012	1037	1	0	0	1	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	t0013	1037	1	0	0	1	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF268_chr12_133176495_133219832	0/1	t0001	10485	48	4	14	27	1	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0002	10487	14	2	1	9	0	2	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0003	10487	11	0	11	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0004	10485	8	0	0	8	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0005	10483	6	4	2	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0006	10488	6	0	4	1	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0007	10485	5	0	3	0	1	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0008	10485	5	0	0	1	1	3	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0009	10486	5	0	1	0	1	3	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0010	10515	4	4	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0011	10512	4	4	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0012	10486	4	0	0	4	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0013	10494	3	0	0	0	0	3	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0014	10482	3	0	0	3	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0015	10486	3	3	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0016	10485	3	3	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0017	10475	3	3	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0018	10486	3	1	0	2	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0019	10485	3	0	0	3	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0020	10489	3	0	0	3	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0021	10550	2	0	1	0	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0022	10557	2	0	0	1	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	t0023	10547	2	0	2	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832