JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF26_chr12_132981367_133032102	0/0	t0234	16099	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0235	16095	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0236	16100	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0237	16100	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0238	16088	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0239	16088	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0240	16088	1	0	1	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0241	16089	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0242	16090	1	0	0	0	0	1	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0243	16094	1	0	0	1	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0244	16094	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0245	16095	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF26_chr12_132981367_133032102	0/0	t0246	16098	1	1	0	0	0	0	copy fasta	ZNF26	chr12	132981367	133032102
ZNF273_chr7_64898273_64935981	0/1	t0001	2018	150	11	34	81	7	16	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0002	2018	111	24	21	49	6	11	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0003	2017	42	9	5	26	0	2	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0004	2017	38	7	6	25	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0005	2021	28	13	1	14	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	1/0	t0006	1989	21	19	1	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0007	2018	6	0	2	3	1	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0008	2019	6	0	2	4	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0009	2017	4	1	3	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0010	2018	3	0	1	0	0	2	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0011	2017	2	0	0	0	2	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0012	2019	2	2	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0013	2018	1	0	0	1	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0014	2018	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0015	2018	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0016	2018	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0017	2018	1	0	0	1	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0018	2018	1	0	0	1	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0019	2018	1	1	0	0	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0020	2018	1	0	0	0	0	1	copy fasta	ZNF273	chr7	64898273	64935981
ZNF273_chr7_64898273_64935981	0/0	t0021	2018	1	0	0	1	0	0	copy fasta	ZNF273	chr7	64898273	64935981
ZNF274_chr19_58178061_58218562	1/1	t0001	847	383	80	77	160	18	46	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	t0002	847	9	8	1	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	t0003	847	2	2	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	t0004	847	2	0	0	2	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	t0005	847	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF274_chr19_58178061_58218562	0/0	t0006	847	1	1	0	0	0	0	copy fasta	ZNF274	chr19	58178061	58218562
ZNF275_chrX_153329153_153357926	0/0	t0001	5131	116	37	16	54	3	6	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0002	5131	74	5	12	48	2	7	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	1/1	t0003	5131	61	8	16	16	4	15	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0004	5131	17	11	0	6	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0005	5131	15	0	0	13	0	2	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0006	5131	6	0	0	6	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0007	5131	5	0	0	5	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0008	5131	4	0	1	1	2	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0009	5131	4	0	4	0	0	0	copy fasta	ZNF275	chrX	153329153	153357926
ZNF275_chrX_153329153_153357926	0/0	t0010	5131	3	1	0	0	0	2	copy fasta	ZNF275	chrX	153329153	153357926