JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF286A_chr17_15694752_15725787	0/0	t0196	3719	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0197	3720	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0198	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0199	3722	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0200	3720	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0201	3721	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0202	3722	1	0	0	0	1	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0203	3719	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0204	3720	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0205	3721	1	0	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0206	3722	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0207	3726	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0208	3725	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	t0209	3720	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF287_chr17_16541954_16574204	0/1	t0001	5354	157	45	29	55	9	18	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0002	5354	35	0	10	23	0	2	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0003	5349	14	13	1	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0004	5349	11	11	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	1/0	t0005	5354	8	0	3	0	3	1	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0006	5349	4	1	2	0	1	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0007	5354	4	4	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0008	5354	3	3	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0009	5354	3	0	0	0	0	3	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0010	5354	3	0	2	0	1	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0011	5353	3	3	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0012	5354	2	1	1	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0013	5349	2	2	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0014	5354	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0015	5349	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0016	5355	1	0	0	1	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0017	5354	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0018	5354	1	0	0	1	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0019	5354	1	0	1	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0020	5354	1	0	0	0	0	1	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0021	5354	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0022	5354	1	0	0	0	0	1	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0023	5349	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0024	5355	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0025	5353	1	0	1	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	t0026	5349	1	1	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF28_chr19_52792408_52826633	0/0	t0001	2402	160	19	11	108	8	14	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/1	t0002	2399	90	16	24	28	7	14	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0003	2402	37	6	7	17	0	7	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0004	2402	34	0	15	11	2	6	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0005	2402	14	5	2	5	1	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0006	2402	12	7	4	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0007	2402	12	2	2	2	0	6	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0008	2399	5	5	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0009	2399	3	0	3	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0010	2401	3	3	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633