JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF28_chr19_52792408_52826633	0/0	t0011	2402	2	0	0	2	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0012	2402	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0013	2402	2	0	0	2	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0014	2402	2	0	0	2	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0015	2402	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0016	2402	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0017	2402	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0018	2402	2	0	0	2	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0019	2402	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0020	2402	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0021	2402	2	1	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0022	2402	1	0	0	0	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0023	2402	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0024	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0025	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0026	2401	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0027	2402	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0028	2385	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0029	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0030	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0031	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0032	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0033	2399	1	0	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0034	2399	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0035	2399	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0036	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0037	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0038	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0039	2402	1	0	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0040	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0041	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	1/0	t0042	2402	1	0	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0043	2402	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0044	2402	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0045	2402	1	0	0	0	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0046	2402	1	0	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0047	2399	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0048	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0049	2402	1	0	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0050	2402	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	t0051	2402	1	0	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF292_chr6_87150565_87270943	1/0	t0001	4170	96	11	17	48	5	14	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0002	4171	92	3	20	49	7	13	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0003	4170	72	26	16	21	3	6	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/1	t0004	4172	42	8	5	24	1	3	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0005	4165	18	13	4	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0006	4171	11	11	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0007	4172	3	0	0	2	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0008	4169	3	3	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	t0009	4170	3	3	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943