JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF300_chr5_150889399_150909980	0/0	t0007	1444	2	2	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0008	1444	2	0	0	2	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0009	1444	2	1	1	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0010	1444	1	0	1	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0011	1444	1	1	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0012	1444	1	1	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0013	1444	1	0	1	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0014	1444	1	0	1	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0015	1444	1	1	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF300_chr5_150889399_150909980	0/0	t0016	1444	1	1	0	0	0	0	copy fasta	ZNF300	chr5	150889399	150909980
ZNF302_chr19_34672678_34691396	1/0	t0001	1654	195	28	29	124	6	7	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/1	t0002	1653	141	46	21	44	8	21	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0003	1654	50	1	6	40	0	3	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0004	1654	14	3	5	0	0	6	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0005	1655	6	0	1	3	0	2	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0006	1654	5	0	4	0	1	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0007	1654	4	0	0	4	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0008	1654	4	3	1	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0009	1654	3	0	0	3	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0010	1654	3	3	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0011	1654	2	1	0	0	1	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0012	1654	2	2	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0013	1654	2	2	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0014	1654	2	2	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0015	1654	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0016	1654	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0017	1653	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0018	1653	1	1	0	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0019	1653	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0020	1653	1	0	1	0	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0021	1654	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0022	1655	1	0	0	0	0	1	copy fasta	ZNF302	chr19	34672678	34691396
ZNF302_chr19_34672678_34691396	0/0	t0023	1655	1	0	0	1	0	0	copy fasta	ZNF302	chr19	34672678	34691396
ZNF304_chr19_57346271_57364898	0/0	t0001	2444	183	7	38	110	7	21	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0002	2443	55	5	2	45	0	3	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	1/1	t0003	2444	54	21	13	13	4	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0004	2445	41	1	7	24	1	8	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0005	2445	13	0	3	6	1	3	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0006	2444	13	12	1	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0007	2444	10	6	1	2	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0008	2445	10	3	3	3	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0009	2444	7	7	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0010	2444	7	0	0	5	0	2	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0011	2445	5	5	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0012	2444	3	3	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0013	2443	3	0	1	0	2	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0014	2444	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0015	2445	2	1	1	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0016	2444	2	1	0	0	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	t0017	2445	2	0	1	0	0	1	copy fasta	ZNF304	chr19	57346271	57364898