JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF318_chr6_43331070_43374647	0/0	t0021	1371	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0022	1365	1	0	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	t0023	1371	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF319_chr16_57989676_58005672	0/1	t0001	3279	135	9	29	73	7	16	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	1/0	t0002	3279	84	2	17	55	2	7	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0003	3279	49	11	4	23	1	10	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0004	3279	34	26	1	6	0	1	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0005	3279	26	23	1	0	2	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0006	3279	25	0	6	14	0	5	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0007	3279	8	8	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0008	3279	8	8	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0009	3279	3	0	0	3	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0010	3278	3	0	0	3	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0011	3279	2	0	1	0	0	1	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0012	3279	2	2	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0013	3279	2	0	2	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0014	3279	2	0	0	2	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0015	3279	2	2	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0016	3279	1	0	0	0	0	1	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0017	3279	1	1	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0018	3311	1	0	0	0	1	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0019	3279	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0020	3278	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0021	3279	1	0	1	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0022	3279	1	0	0	0	1	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0023	3279	1	0	1	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0024	3279	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0025	3279	1	0	1	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0026	3279	1	1	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0027	3279	1	1	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0028	3279	1	0	0	0	0	1	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0029	3279	1	1	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0030	3279	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0031	3279	1	1	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	t0032	3279	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF320_chr19_52871180_52902635	0/0	t0001	4802	126	15	25	68	2	16	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0002	4800	70	8	11	42	4	5	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/1	t0003	4800	37	8	14	1	2	11	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0004	4789	33	1	11	18	1	2	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0005	4793	19	10	1	5	1	2	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0006	4803	16	6	1	7	0	2	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0007	4802	15	0	0	15	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0008	4801	8	5	2	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0009	4801	8	0	0	7	0	1	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0010	4801	6	1	0	5	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0011	4799	5	0	0	5	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0012	4800	5	0	3	0	2	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0013	4802	5	5	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0014	4801	4	0	4	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	t0015	4800	4	0	0	3	0	1	copy fasta	ZNF320	chr19	52871180	52902635