JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF331_chr19_53533145_53585269	0/0	t0034	2674	1	0	0	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0035	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0036	2674	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0037	2672	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0038	2645	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	t0039	2674	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF333_chr19_14685048_14726899	0/0	t0001	2717	140	25	25	72	2	16	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/1	t0002	2720	67	10	22	24	5	5	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0003	2721	32	9	8	7	3	5	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0004	2718	29	3	2	22	0	2	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0005	2715	26	3	0	20	0	3	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0006	2716	17	17	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	1/0	t0007	2719	12	0	3	5	1	2	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0008	2717	8	0	4	0	1	3	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0009	2718	7	0	2	5	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0010	2719	6	6	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0011	2721	3	0	0	2	0	1	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0012	2716	3	0	1	0	2	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0013	2719	3	1	0	2	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0014	2704	2	2	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0015	2718	2	2	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0016	2726	2	2	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0017	2722	2	2	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0018	2720	2	0	0	2	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0019	2721	1	0	0	0	1	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0020	2707	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0021	2721	1	0	0	0	1	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0022	2718	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0023	2720	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0024	2707	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0025	2716	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0026	2718	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0027	2717	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0028	2717	1	0	0	0	0	1	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0029	2718	1	0	1	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0030	2717	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0031	2717	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0032	2717	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0033	2717	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0034	2718	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0035	2716	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0036	2717	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0037	2725	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0038	2751	1	0	0	0	0	1	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0039	2717	1	0	0	1	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0040	2720	1	1	0	0	0	0	copy fasta	ZNF333	chr19	14685048	14726899
ZNF333_chr19_14685048_14726899	0/0	t0041	2717	1	0	0	0	0	1	copy fasta	ZNF333	chr19	14685048	14726899
ZNF334_chr20_46494630_46518559	1/0	t0001	2725	171	29	27	96	3	15	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/0	t0002	2725	109	21	21	44	4	19	copy fasta	ZNF334	chr20	46494630	46518559
ZNF334_chr20_46494630_46518559	0/1	t0003	2725	60	36	11	1	3	8	copy fasta	ZNF334	chr20	46494630	46518559