JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF419_chr19_57482750_57501098	0/0	t0013	2203	7	5	1	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0014	2193	6	0	1	0	0	5	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0015	2193	6	0	0	6	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0016	2211	5	2	0	2	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0017	2202	4	4	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0018	2204	4	4	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/1	t0019	2194	4	1	1	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0020	2203	3	3	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0021	2195	3	1	0	2	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0022	2203	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0023	2205	2	1	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0024	2202	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0025	2199	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0026	2193	2	1	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0027	2192	2	0	0	2	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0028	2209	2	0	0	2	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0029	2194	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0030	2196	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0031	2195	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0032	2197	2	0	0	1	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0033	2183	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0034	2193	2	1	0	0	1	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0035	2221	1	0	0	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0036	2198	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0037	2188	1	0	0	0	1	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0038	2187	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0039	2186	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0040	2183	1	0	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0041	2209	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0042	2193	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0043	2198	1	0	0	0	1	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0044	2196	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0045	2193	1	0	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0046	2188	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0047	2186	1	0	0	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0048	2185	1	0	0	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0049	2211	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0050	2209	1	0	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0051	2193	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0052	2194	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0053	2193	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0054	2195	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0055	2194	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0056	2196	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0057	2195	1	0	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0058	2204	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF41_chrX_47440178_47488222	0/0	t0001	2660	121	37	21	47	4	12	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0002	2660	118	16	17	72	3	10	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	1/1	t0003	2660	65	18	17	16	5	7	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0004	2660	3	0	1	0	1	1	copy fasta	ZNF41	chrX	47440178	47488222