JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF444_chr19_56136287_56165893	0/0	t0011	957	2	2	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0012	960	2	0	0	0	0	2	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0013	960	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0014	960	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0015	960	1	0	0	0	0	1	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0016	960	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0017	960	1	0	0	1	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0018	960	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0019	980	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0020	960	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0021	960	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0022	960	1	0	0	1	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF445_chr3_44426705_44482670	0/0	t0001	15220	12	0	1	10	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0002	15218	9	3	2	0	3	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0003	15217	8	0	6	0	1	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0004	15220	8	2	4	0	2	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/1	t0005	15218	8	0	6	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0006	15222	8	0	1	7	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0007	15216	5	4	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0008	15224	5	3	2	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0009	15220	4	0	3	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0010	15214	4	3	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0011	15225	4	2	2	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0012	15225	4	0	0	4	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0013	15226	3	1	0	0	1	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0014	15215	3	2	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0015	15226	3	3	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0016	15219	3	0	1	1	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0017	15221	3	0	0	0	0	3	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0018	15216	3	1	0	0	1	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0019	15224	3	0	1	2	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0020	15221	3	3	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0021	15216	2	1	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0022	15214	2	0	2	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0023	15223	2	2	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0024	15221	2	0	0	0	1	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0025	15228	2	2	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0026	15221	2	0	0	2	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0027	15225	2	0	2	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0028	15218	2	0	0	1	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0029	15216	2	0	2	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0030	15214	2	0	0	2	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0031	15220	2	0	0	2	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0032	15226	2	1	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0033	15222	2	1	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0034	15228	2	0	0	1	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0035	15215	2	2	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0036	15222	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0037	15220	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0038	15218	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670